MOLECULAR DYNAMIC SIMULATION USING GROMACS
MOLECULAR DYNAMIC SIMULATION USING GROMACS program covers following topics:
- Biological Database like NCBI, EMBL, PDB, Uniprot, DDBJ, KEGG etc.
- Sequence Alignment employing BLAST, FASTA, CLUSTAL
- Phylogenetic Relationship using MEGA, CLUSTAL and Phylip
- Primer Designing and Gene Prediction
- Protein Modelling like Modeller, SWISS MODEL, and Visualization tool like Rasmol, SWISS PDB Viewer and PyMol.
- Introduction to NGS and GROMACS
- Hetero and Homo dimer chain simulation
- In dppc
- Preparation of Umbrella Protein
- Biphasic Molecules
- Protein Ligand system
- Energy Solvation
- Virtual Sites
- Analyze the Simulation Results and Protein Ligand simulation
- BCPreds and MHCPreds